Show Alteration Catalogue Profile
show_catalogue( catalogue, mode = c("SBS", "copynumber", "DBS", "ID", "RS"), method = "Wang", normalize = c("raw", "row", "feature"), style = c("default", "cosmic"), samples = NULL, samples_name = NULL, x_lab = "Components", y_lab = "Counts", ... )
catalogue | result from sig_tally or a matrix with row representing components (motifs) and column representing samples |
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mode | signature type for plotting, now supports 'copynumber', 'SBS', 'DBS', 'ID' and 'RS' (genome rearrangement signature). |
method | method for copy number feature classification in sig_tally, can be one of "Wang" ("W"), "S". |
normalize | normalize method. |
style | plot style, one of 'default' and 'cosmic'. |
samples | default is |
samples_name | set the sample names shown in plot. |
x_lab | x axis lab. |
y_lab | y axis lab. |
... | other arguments passing to show_sig_profile. |
a ggplot
object
data("simulated_catalogs") p <- show_catalogue(simulated_catalogs$set1, style = "cosmic") p