R/get_sig_cancer_type_index.R
get_sig_cancer_type_index.Rd
Obtain Signature Index for Cancer Types
get_sig_cancer_type_index( sig_type = c("legacy", "SBS", "DBS", "ID"), seq_type = c("WGS", "WES"), source = c("PCAWG", "TCGA", "nonPCAWG"), keyword = NULL )
sig_type | signature type. |
---|---|
seq_type | sequencing type. |
source | data source. |
keyword | keyword to search in the signature index database. |
a list
.
l1 <- get_sig_cancer_type_index() l2 <- get_sig_cancer_type_index(sig_type = "SBS") l3 <- get_sig_cancer_type_index(sig_type = "DBS", source = "PCAWG", seq_type = "WGS") l4 <- get_sig_cancer_type_index(sig_type = "ID") l5 <- get_sig_cancer_type_index(keyword = "breast") l1 l2 l3 l4 l5