sigminer: Signature Miner
1 Introduction
I Common Workflow
2 COSMIC Signature Identification
3 Copy Number Signature Identification
4 Signature Fit: Sample Signature Exposure Quantification and Analysis
5 Subtype Prediction
6 Sigflow Pipeline
- 6.1 Cancer type specific signature index database
II Target Visualization
7 CopyNumber Object
- 7.1 Profile
- 7.2 Distribution
8 Signature Object
III Universal Analysis
9 Association Analysis and Visualization
- 9.1 General numeric association
- 9.2 Comprehensive association
10 Group Analysis and Visualization
IV Useful Utilities
11 Datasets
- 11.1 Reference Annotation
- 11.2 Copy Number components setting
12 SBS Signature Conversion
References
Published with bookdown

Sigminer: A Scalable Toolkit to Extract, Analyze and Visualize Mutational Signatures

Chapter 7 CopyNumber Object

7.1 Profile

show_cn_profile(cn, nrow = 2, ncol = 1)

show_cn_circos(cn, samples = 1)

7.2 Distribution

show_cn_distribution(cn, mode = "ld")

show_cn_distribution(cn, mode = "cd")